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error installing dalton on centos 7.x, openmpi 1.8.3, intel

Posted: 21 May 2015, 12:29
by armandology
error installing dalton on centos 7.x, openmpi 1.8.3, intel compiler 2015

Scanning dependencies of target lsutillib
make[2]: Warning: File `CMakeFiles/lsutillib.dir/depend.make' has modification time 0.19 s in the future
make[3]: Warning: File `CMakeFiles/lsutillib.dir/depend.make' has modification time 0.18 s in the future
make[3]: warning: Clock skew detected. Your build may be incomplete.
make[2]: warning: Clock skew detected. Your build may be incomplete.
make[2]: Warning: File `CMakeFiles/lsutillib.dir/depend.make' has modification time 0.18 s in the future
[ 78%] Building Fortran object CMakeFiles/lsutillib.dir/binary_info.F90.o
Linking Fortran static library lib/liblsutillib.a
make[2]: warning: Clock skew detected. Your build may be incomplete.
[ 79%] Built target lsutillib
[ 80%] Built target xcfun_interface
[ 80%] Building Fortran object CMakeFiles/lsintlib.dir/LSDALTON/LSint/II_dft_int.F90.o
catastrophic error: **Internal compiler error: segmentation violation signal raised** Please report this error along with the circumstances in which it occurred in a Software Problem Report. Note: File and line given may not be explicit cause of this error.
compilation aborted for /srcs/dalton/DALTON-2015.0-Source/LSDALTON/LSint/II_dft_int.F90 (code 1)
make[3]: *** [CMakeFiles/lsintlib.dir/LSDALTON/LSint/II_dft_int.F90.o] Error 1
make[2]: *** [CMakeFiles/lsintlib.dir/LSDALTON/LSint/II_dft_int.F90.o.provides] Error 2
make[1]: *** [CMakeFiles/lsintlib.dir/all] Error 2
make: *** [all] Error 2

Re: error installing dalton on centos 7.x, openmpi 1.8.3, in

Posted: 21 May 2015, 12:39
by janus
What is the compiler version? How did you compile? Could you add the output from the setup script?

Re: error installing dalton on centos 7.x, openmpi 1.8.3, in

Posted: 21 May 2015, 13:02
by simensr
He writes intel 2015. Intel 2015 is not supported for this release, and we recommend to use 2014 or earlier versions instead:

http://dalton-installation.readthedocs. ... orted.html

Technical: The problem you report is typically related to problems with inter-procedural optimisation, and can typically be avoided by compiling with lower optimisation flags (or splitting the file or subroutine where the problem occur).

Not recommended: If you still would like to try intel 2015, you can compile the above given file with lower optimisation flags. To do this, first do a "make VERBOSE=1" (large output), find and copy the full line with the compilation of the above file and change the optimisation flag to say -O0 to recompile the given file, and continue with the compilation with a new "make".

Cheers,
Simen

Re: error installing dalton on centos 7.x, openmpi 1.8.3, in

Posted: 21 May 2015, 13:13
by armandology
ok I shall try with intel 2013 now.

Regards

-- amit

Re: error installing dalton on centos 7.x, openmpi 1.8.3, in

Posted: 21 May 2015, 13:14
by simensr
Good luck!

Re: error installing dalton on centos 7.x, openmpi 1.8.3, in

Posted: 21 May 2015, 16:52
by armandology
thanks Dalton installs with IC 2013.

Re: error installing dalton on centos 7.x, openmpi 1.8.3, in

Posted: 21 May 2015, 17:07
by simensr
Great, glad to hear.